D1.3. Web-based database containing network phylogenies and genetic diversity networks
| by CCMAR and IFISC/IMEDEA-UIB |
| Output type: data |
 URL: http://ifisc.uib-csic.es/EDEN/Data |
The EDEN project has developed novel methodologies to characterize genetic relationships among biological individuals and species by using network methods. This deliverable consists in a series of data files, accessible via the EDEN web, containing results of analysis of two seagrass species, Posidonia oceanica and Cymodocea nodosa.
Details of the methodology used to obtain each file and of the meaning and interpretation of the different concepts (such as Genetic Diversity Spectrum, GDS, percolation thresholds, etc.) are described in deliverables D4.1 (http://ifisc.uib-csic.es/EDEN/fichaOutput.php?idOutput=14),D4.2 (http://ifisc.uib-csic.es/EDEN/fichaOutput.php?idOutput=18) and in the references cited there. In fact, the following two references contain enough material to understand all the concepts and files presented here:
Spectrum of genetic diversity and networks of clonal organisms. A.F. Rozenfeld, S. Arnaud-Haond, E. Hernandez-Garcia, V.M. Eguiluz, M.A. Matias, E. Serrao, C.M. Duarte. Journal of the Royal Society Interface 4, 1093-1102 (2007) . http://dx.doi.org/10.1098/rsif.2007.0230
Network analysis identifies weak and strong links in a metapopulation system. A.F. Rozenfeld, S. Arnaud-Haond, E. Hernández-García, V.M. Eguíluz, E.A. Serrão and C.M. Duarte. Proceedings of the National Academy of Sciences of the USA (PNAS) 105, 18824-18829 (2008). http://dx.doi.org/10.1073/pnas.0805571105
The file D1.3NetsGDS.pdf contains additional details and description of the data files in the web.
